Thanks for the feedback!
To answer a few of your questions, I'm using a Logitech QCP9000 and capturing the frames with Monkey Jam. As this was just a fairly straightforward test, there really wasn't need for any post production so nothing there. It's animated at 15 FPS which seems to be the standard from most other films I've seen on YouTube, etc. And yes, I do animate on a desk, but it's one that's shared by my keyboard and mouse which could very likely relate to the set bump. My next step is to get a table/desk devoted solely to filming and a better lighting setup. I'm pretty sure I have everything on the cam set to manual.
One thing I've noticed with Monkey Jam is when the Capture aspect of the program is used, it seems to 'start' my webcam with default settings which includes auto-focus, auto white balance, etc. Is there a way to set or save my camera settings to manual when Monkey Jam Capture is opened? For my current purposes this hasn't been a problem, but I could see it being the case if I were working on a larger project. It would mean I'd have to essentially shoot an entire scene all at once without shutting down Monkey Jam.
Didn't mean for this to become so lengthy... Thanks for any help you all can offer!